PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105532.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 446aa    MW: 49429.4 Da    PI: 8.3569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105532.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.2e-067395123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_010105532.1 73 YVCEICNQGFQRDQNLQMHRRRH 95
                    9*********************9 PP

2zf-C2H215.45.2e-05150172123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k +  +s++k H++t+
  XP_010105532.1 150 WVCDKCSKGYAVQSDYKAHLKTC 172
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.74E-57295No hitNo description
PROSITE profilePS5015710.977395IPR007087Zinc finger, C2H2
SMARTSM003550.00527395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355210114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.1E-4141171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.74E-5145170No hitNo description
SMARTSM0035565150177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009590Biological Processdetection of gravity
GO:0009959Biological Processnegative gravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010031Biological Processcircumnutation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MLDNNTASSS DHHHIPFPDP SENGITTTTT TSNNNNKRKR RPAGTPVILS LCIDPDAEVV  60
SLSPKTLLES DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRETQEVK KRVFVCPEPS  120
CLHHDPCHAL GDLVGIKKHF RRKHSNHKQW VCDKCSKGYA VQSDYKAHLK TCGTRGHSCD  180
CGRVFSRVES FIEHQDSCTV RTVRPELQAL QPSSTAGAAA ATACSSRTAS STSPSSEANF  240
GNIATPILPA RVLNLPKPME PLFFSSERSS TKPSSTATTT NNSSNHHRQQ HFLELQLLPS  300
SSPLHNSPDE NFSTRLKLSI GCDETTETAN INKPSSEELM KVAMAEKAYA EEARREAKRQ  360
IEISEQEFAN AKRIRQQAQA ELEKAQLLRE QATKKISSTI LQITCQACKQ QFQTTPSSAA  420
LGGPSDETTS LAMSYMSSAT TEGEGE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00254DAPTransfer from AT2G01940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105532.10.0Zinc finger protein MAGPIE
SwissprotF4IPE31e-168IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLW9RRT90.0W9RRT9_9R
STRINGPOPTR_0008s13980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-110indeterminate(ID)-domain 14